HL_9Q6Q_034

3D structure

PDB id

9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9Q6Q|1|1A|U|1396, 9Q6Q|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6Q_034 not in the Motif Atlas

Homologous match to HL_8B0X_063

Geometric discrepancy: 0.11

The information below is about HL_8B0X_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9Q6Q|1|1A|G|1389
9Q6Q|1|1A|U|1390
9Q6Q|1|1A|U|1391
9Q6Q|1|1A|A|1392
9Q6Q|1|1A|A|1393
9Q6Q|1|1A|U|1394
9Q6Q|1|1A|A|1395
9Q6Q|1|1A|U|1396
9Q6Q|1|1A|U|1397
9Q6Q|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23