HL_9Q6R_022

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

9Q6R|1|1A|A|781, 9Q6R|1|1A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6R_022 not in the Motif Atlas

Homologous match to HL_8B0X_054

Geometric discrepancy: 0.129

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9Q6R|1|1A|U|779
9Q6R|1|1A|G|780
9Q6R|1|1A|A|781
9Q6R|1|1A|A|782
9Q6R|1|1A|A|783
9Q6R|1|1A|A|784
9Q6R|1|1A|G|785

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2