HL_9Q6S_111

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

9Q6S|1|2A|G|329, 9Q6S|1|2A|A|330, 9Q6S|1|2A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6S_111 not in the Motif Atlas

Homologous match to HL_8B0X_043

Geometric discrepancy: 0.1558

The information below is about HL_8B0X_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9Q6S|1|2A|G|327
9Q6S|1|2A|U|328
9Q6S|1|2A|G|329
9Q6S|1|2A|A|330
9Q6S|1|2A|A|331
9Q6S|1|2A|A|332
9Q6S|1|2A|G|333
9Q6S|1|2A|C|334
9Q6S|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24