HL_9Q6V_080

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

9Q6V|1|1a|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_080 not in the Motif Atlas

Geometric match to HL_4LFB_012

Geometric discrepancy: 0.1132

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9Q6V|1|1a|C|458
9Q6V|1|1a|G|460
9Q6V|1|1a|A|461
9Q6V|1|1a|C|470
9Q6V|1|1a|G|471
9Q6V|1|1a|A|472
9Q6V|1|1a|G|473

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16