HL_9Q6V_174

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_174 not in the Motif Atlas

Homologous match to HL_8B0X_007

Geometric discrepancy: 0.0752

The information below is about HL_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9Q6V|1|2a|C|320
9Q6V|1|2a|A|321
9Q6V|1|2a|C|322
9Q6V|1|2a|U|323
9Q6V|1|2a|G|324
9Q6V|1|2a|A|325
9Q6V|1|2a|G|326
9Q6V|1|2a|A|327
9Q6V|1|2a|C|328
9Q6V|1|2a|A|329
9Q6V|1|2a|C|330
9Q6V|1|2a|G|331
9Q6V|1|2a|G|332
9Q6V|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20