HL_9Q6V_196

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAUCAGCCAUGC

Length

12 nucleotides

Bulged bases

9Q6V|1|2a|C|1363, 9Q6V|1|2a|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q6V_196 not in the Motif Atlas

Homologous match to HL_8B0X_027

Geometric discrepancy: 0.1336

The information below is about HL_8B0X_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.4

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q6V|1|2a|G|1356
9Q6V|1|2a|A|1357
9Q6V|1|2a|U|1358
9Q6V|1|2a|C|1359
9Q6V|1|2a|A|1360
9Q6V|1|2a|G|1361
9Q6V|1|2a|C|1362
9Q6V|1|2a|C|1363
9Q6V|1|2a|A|1363|||A
9Q6V|1|2a|U|1364
9Q6V|1|2a|G|1365
9Q6V|1|2a|C|1366

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2u

30S ribosomal protein Thx