HL_9Q7Q_017

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q7Q_017 not in the Motif Atlas

Homologous match to HL_9PN5_016

Geometric discrepancy: 0.0788

The information below is about HL_9PN5_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9Q7Q|1|5|U|1389
9Q7Q|1|5|G|1390
9Q7Q|1|5|A|1391
9Q7Q|1|5|A|1392
9Q7Q|1|5|G|1393
9Q7Q|1|5|G|1394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein eL13

Chain Q

Large ribosomal subunit protein eL18

Chain a

60S ribosomal protein L27a

Chain i

Large ribosomal subunit protein eL36