HL_9Q7Q_038

3D structure

PDB id

9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

ABCE1-eRF1-RNC-AMD1C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9Q7Q|1|5|C|2739, 9Q7Q|1|5|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q7Q_038 not in the Motif Atlas

Homologous match to HL_8GLP_044

Geometric discrepancy: 0.1397

The information below is about HL_8GLP_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.6

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9Q7Q|1|5|C|2738
9Q7Q|1|5|C|2739
9Q7Q|1|5|U|2740
9Q7Q|1|5|U|2741
9Q7Q|1|5|G|2742

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain p

eL43