HL_9Q87_012

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9Q87|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2771

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9Q87|1|A|G|462
9Q87|1|A|U|463
9Q87|1|A|U|464
9Q87|1|A|A|465
9Q87|1|A|A|466
9Q87|1|A|U|467
9Q87|1|A|A|468
9Q87|1|A|C|469
9Q87|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains