HL_9Q87_034

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

G(OMC)UUACAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_034 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.0895

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9Q87|1|Z|G|31
9Q87|1|Z|OMC|32
9Q87|1|Z|U|33
9Q87|1|Z|U|34
9Q87|1|Z|A|35
9Q87|1|Z|C|36
9Q87|1|Z|A|37
9Q87|1|Z|A|38
9Q87|1|Z|C|39

Current chains

Chain Z

P-site tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

Small ribosomal subunit protein uS9

Chain X

mRNA