HL_9Q87_063

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9Q87|1|a|A|1072

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_063 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2176

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q87|1|a|C|1066
9Q87|1|a|U|1067
9Q87|1|a|U|1068
9Q87|1|a|A|1069
9Q87|1|a|G|1070
9Q87|1|a|A|1071
9Q87|1|a|A|1072
9Q87|1|a|G|1073
9Q87|1|a|C|1074
9Q87|1|a|A|1075
9Q87|1|a|G|1076

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein uL11