HL_9Q87_065

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

9Q87|1|a|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_065 not in the Motif Atlas

Geometric match to HL_8CRE_017

Geometric discrepancy: 0.1966

The information below is about HL_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9Q87|1|a|C|1174
9Q87|1|a|U|1175
9Q87|1|a|U|1176
9Q87|1|a|A|1177
9Q87|1|a|U|1178
9Q87|1|a|G|1179

Current chains

Chain a

23S rRNA

Nearby chains