HL_9Q87_070

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9Q87|1|a|U|1398, 9Q87|1|a|U|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_070 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0654

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q87|1|a|G|1391
9Q87|1|a|U|1392
9Q87|1|a|U|1393
9Q87|1|a|A|1394
9Q87|1|a|A|1395
9Q87|1|a|U|1396
9Q87|1|a|A|1397
9Q87|1|a|U|1398
9Q87|1|a|U|1399
9Q87|1|a|C|1400

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23