HL_9Q87_085

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9Q87|1|a|6MZ|2034, 9Q87|1|a|A|2035, 9Q87|1|a|G|2036

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_085 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0609

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q87|1|a|G|2031
9Q87|1|a|U|2032
9Q87|1|a|G|2033
9Q87|1|a|6MZ|2034
9Q87|1|a|A|2035
9Q87|1|a|G|2036
9Q87|1|a|A|2037
9Q87|1|a|U|2038
9Q87|1|a|G|2039
9Q87|1|a|C|2040

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain q

Large ribosomal subunit protein bL21

Chain z

Large ribosomal subunit protein bL32