HL_9Q87_088

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9Q87|1|a|G|2254

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_088 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.0887

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9Q87|1|a|C|2252
9Q87|1|a|U|2253
9Q87|1|a|G|2254
9Q87|1|a|OMG|2255
9Q87|1|a|G|2256
9Q87|1|a|G|2257
9Q87|1|a|C|2258
9Q87|1|a|G|2259
9Q87|1|a|G|2260

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27