HL_9Q87_095

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_095 not in the Motif Atlas

Homologous match to HL_9DFE_058

Geometric discrepancy: 0.1442

The information below is about HL_9DFE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9Q87|1|a|A|2475
9Q87|1|a|G|2476
9Q87|1|a|U|2477
9Q87|1|a|U|2478
9Q87|1|a|C|2479
9Q87|1|a|A|2480
9Q87|1|a|U|2481
9Q87|1|a|A|2482
9Q87|1|a|U|2483

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain g

Large ribosomal subunit protein uL6

Chain l

Large ribosomal subunit protein uL16