HL_9Q87_103

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9Q87|1|a|A|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q87_103 not in the Motif Atlas

Homologous match to HL_9DFE_065

Geometric discrepancy: 0.1485

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9Q87|1|a|G|2823
9Q87|1|a|A|2824
9Q87|1|a|A|2825
9Q87|1|a|G|2826
9Q87|1|a|A|2827
9Q87|1|a|C|2828
9Q87|1|a|G|2829
9Q87|1|a|A|2830
9Q87|1|a|C|2831

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain z

Large ribosomal subunit protein bL32