HL_9QEH_008

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0652

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

9QEH|1|A|C|249
9QEH|1|A|G|250
9QEH|1|A|G|251
9QEH|1|A|C|252
9QEH|1|A|G|253
9QEH|1|A|A|254
9QEH|1|A|G|255

Current chains

Chain A

23S rRNA

Nearby chains

Chain 11

E_site tRNA

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15