HL_9QEH_013

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9QEH|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.086

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9QEH|1|A|G|456
9QEH|1|A|G|457
9QEH|1|A|A|458
9QEH|1|A|C|459
9QEH|1|A|C|460
9QEH|1|A|A|461
9QEH|1|A|U|462
9QEH|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains