HL_9QEH_016

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

9QEH|1|A|U|590, 9QEH|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_016 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1289

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

9QEH|1|A|C|587
9QEH|1|A|G|588
9QEH|1|A|U|589
9QEH|1|A|U|590
9QEH|1|A|A|591
9QEH|1|A|A|592
9QEH|1|A|U|593
9QEH|1|A|G|594

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein uL13

Chain P

Large ribosomal subunit protein bL21