HL_9QEH_019

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_019 not in the Motif Atlas

Homologous match to HL_9DFE_018

Geometric discrepancy: 0.0691

The information below is about HL_9DFE_018

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QEH|1|A|C|674
9QEH|1|A|G|675
9QEH|1|A|A|676
9QEH|1|A|A|677
9QEH|1|A|A|678
9QEH|1|A|G|679

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15