HL_9QEH_020

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9QEH|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_020 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.1657

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QEH|1|A|U|686
9QEH|1|A|G|687
9QEH|1|A|A|688
9QEH|1|A|A|689
9QEH|1|A|U|690
9QEH|1|A|A|691
9QEH|1|A|G|692

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33A

Chain 3

Large ribosomal subunit protein bL35

Chain J

Large ribosomal subunit protein uL15