HL_9QEH_027

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_027 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.0911

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QEH|1|A|C|1260
9QEH|1|A|G|1261
9QEH|1|A|U|1262
9QEH|1|A|A|1263
9QEH|1|A|A|1264
9QEH|1|A|G|1265

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15

Chain O

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein bL21