HL_9QEH_034

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9QEH|1|A|A|1660, 9QEH|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_034 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0673

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9QEH|1|A|C|1656
9QEH|1|A|G|1657
9QEH|1|A|A|1658
9QEH|1|A|C|1659
9QEH|1|A|A|1660
9QEH|1|A|C|1661
9QEH|1|A|A|1662
9QEH|1|A|G|1663

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Q

Large ribosomal subunit protein uL22