HL_9QEH_035

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

9QEH|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_035 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1073

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9QEH|1|A|A|1673
9QEH|1|A|U|1674
9QEH|1|A|G|1675
9QEH|1|A|A|1676
9QEH|1|A|G|1677
9QEH|1|A|A|1678
9QEH|1|A|A|1679
9QEH|1|A|U|1680
9QEH|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains