HL_9QEH_041

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9QEH|1|A|A|2057, 9QEH|1|A|A|2058, 9QEH|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_041 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0651

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9QEH|1|A|G|2054
9QEH|1|A|U|2055
9QEH|1|A|G|2056
9QEH|1|A|A|2057
9QEH|1|A|A|2058
9QEH|1|A|G|2059
9QEH|1|A|A|2060
9QEH|1|A|U|2061
9QEH|1|A|G|2062
9QEH|1|A|C|2063

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain P

Large ribosomal subunit protein bL21

Chain Z

Large ribosomal subunit protein bL32