HL_9QEH_049

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

9QEH|1|A|U|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_049 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2062

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9QEH|1|A|A|2498
9QEH|1|A|G|2499
9QEH|1|A|U|2500
9QEH|1|A|U|2501
9QEH|1|A|C|2502
9QEH|1|A|A|2503
9QEH|1|A|C|2504
9QEH|1|A|A|2505
9QEH|1|A|U|2506

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain K

Large ribosomal subunit protein uL16