HL_9QEH_052

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_052 not in the Motif Atlas

Homologous match to HL_9DFE_061

Geometric discrepancy: 0.064

The information below is about HL_9DFE_061

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QEH|1|A|C|2621
9QEH|1|A|G|2622
9QEH|1|A|U|2623
9QEH|1|A|G|2624
9QEH|1|A|A|2625
9QEH|1|A|G|2626

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2