HL_9QEQ_002

3D structure

PDB id

9QEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the transcribing Pol II-DSIF-SPT6-U1 snRNP complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

9QEQ|1|a|U|67, 9QEQ|1|a|G|68, 9QEQ|1|a|C|69, 9QEQ|1|a|U|72, 9QEQ|1|a|C|73, 9QEQ|1|a|C|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QEQ|1|a|C|64
9QEQ|1|a|A|65
9QEQ|1|a|U|66
9QEQ|1|a|U|67
9QEQ|1|a|G|68
9QEQ|1|a|C|69
9QEQ|1|a|A|70
9QEQ|1|a|C|71
9QEQ|1|a|U|72
9QEQ|1|a|C|73
9QEQ|1|a|C|74
9QEQ|1|a|G|75

Current chains

Chain a

U1 snRNA

Nearby chains

Chain c

U1 small nuclear ribonucleoprotein A