HL_9QLO_037

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9QLO|1|L5|U|2530, 9QLO|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QLO_037 not in the Motif Atlas

Homologous match to HL_8GLP_038

Geometric discrepancy: 0.043

The information below is about HL_8GLP_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9QLO|1|L5|G|2523
9QLO|1|L5|U|2524
9QLO|1|L5|U|2525
9QLO|1|L5|C|2526
9QLO|1|L5|A|2527
9QLO|1|L5|G|2528
9QLO|1|L5|A|2529
9QLO|1|L5|U|2530
9QLO|1|L5|C|2531
9QLO|1|L5|C|2532

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34