HL_9QLP_033
3D structure
- PDB id
- 9QLP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with full length ARF1 - State 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QLP_033 not in the Motif Atlas
- Homologous match to HL_8GLP_033
- Geometric discrepancy: 0.053
- The information below is about HL_8GLP_033
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9QLP|1|L5|A|2376
9QLP|1|L5|C|2377
9QLP|1|L5|G|2378
9QLP|1|L5|A|2379
9QLP|1|L5|G|2380
9QLP|1|L5|A|2381
9QLP|1|L5|A|2382
9QLP|1|L5|C|2383
9QLP|1|L5|U|2384
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
- Chain NA
- Nascent polypeptide-associated complex subunit alpha
- Chain NB
- Isoform 2 of Transcription factor BTF3
Coloring options: