HL_9QLQ_106

3D structure

PDB id

9QLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - alternative State

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9QLQ|1|S2|C|1419, 9QLQ|1|S2|G|1420, 9QLQ|1|S2|A|1421, 9QLQ|1|S2|G|1422, 9QLQ|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QLQ_106 not in the Motif Atlas

Homologous match to HL_9H3G_103

Geometric discrepancy: 0.5112

The information below is about HL_9H3G_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9QLQ|1|S2|C|1416
9QLQ|1|S2|C|1417
9QLQ|1|S2|C|1418
9QLQ|1|S2|C|1419
9QLQ|1|S2|G|1420
9QLQ|1|S2|A|1421
9QLQ|1|S2|G|1422
9QLQ|1|S2|C|1423
9QLQ|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19