HL_9QOH_013

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCCC

Length

24 nucleotides

Bulged bases

9QOH|1|A2|G|1010, 9QOH|1|A2|U|1011, 9QOH|1|A2|C|1013, 9QOH|1|A2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|G|1001
9QOH|1|A2|G|1002
9QOH|1|A2|G|1003
9QOH|1|A2|C|1004
9QOH|1|A2|G|1005
9QOH|1|A2|G|1006
9QOH|1|A2|A|1007
9QOH|1|A2|C|1008
9QOH|1|A2|U|1009
9QOH|1|A2|G|1010
9QOH|1|A2|U|1011
9QOH|1|A2|C|1012
9QOH|1|A2|C|1013
9QOH|1|A2|C|1014
9QOH|1|A2|C|1015
9QOH|1|A2|A|1016
9QOH|1|A2|G|1017
9QOH|1|A2|U|1018
9QOH|1|A2|G|1019
9QOH|1|A2|C|1020
9QOH|1|A2|G|1021
9QOH|1|A2|C|1022
9QOH|1|A2|C|1023
9QOH|1|A2|C|1024

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain G2

Large ribosomal subunit protein uL18