HL_9QQP_013

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCCC

Length

24 nucleotides

Bulged bases

9QQP|1|A2|G|1005, 9QQP|1|A2|G|1010, 9QQP|1|A2|U|1011, 9QQP|1|A2|C|1013, 9QQP|1|A2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|G|1001
9QQP|1|A2|G|1002
9QQP|1|A2|G|1003
9QQP|1|A2|C|1004
9QQP|1|A2|G|1005
9QQP|1|A2|G|1006
9QQP|1|A2|A|1007
9QQP|1|A2|C|1008
9QQP|1|A2|U|1009
9QQP|1|A2|G|1010
9QQP|1|A2|U|1011
9QQP|1|A2|C|1012
9QQP|1|A2|C|1013
9QQP|1|A2|C|1014
9QQP|1|A2|C|1015
9QQP|1|A2|A|1016
9QQP|1|A2|G|1017
9QQP|1|A2|U|1018
9QQP|1|A2|G|1019
9QQP|1|A2|C|1020
9QQP|1|A2|G|1021
9QQP|1|A2|C|1022
9QQP|1|A2|C|1023
9QQP|1|A2|C|1024

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain G2

Large ribosomal subunit protein uL18