HL_9QQP_016

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCGUCCGAAAG

Length

12 nucleotides

Bulged bases

9QQP|1|A2|C|1179, 9QQP|1|A2|G|1180, 9QQP|1|A2|U|1181, 9QQP|1|A2|A|1185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|1177
9QQP|1|A2|U|1178
9QQP|1|A2|C|1179
9QQP|1|A2|G|1180
9QQP|1|A2|U|1181
9QQP|1|A2|C|1182
9QQP|1|A2|C|1183
9QQP|1|A2|G|1184
9QQP|1|A2|A|1185
9QQP|1|A2|A|1186
9QQP|1|A2|A|1187
9QQP|1|A2|G|1188

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F1

Large ribosomal subunit protein eL13

Chain F2

Large ribosomal subunit protein uL4

Chain H1

Large ribosomal subunit protein eL15

Chain S2

Large ribosomal subunit protein uL24