HL_9QQP_087

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9QQP|1|m2|C|452, 9QQP|1|m2|G|453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|C|443
9QQP|1|m2|C|444
9QQP|1|m2|U|445
9QQP|1|m2|G|446
9QQP|1|m2|A|447
9QQP|1|m2|G|448
9QQP|1|m2|A|449
9QQP|1|m2|A|450
9QQP|1|m2|A|451
9QQP|1|m2|C|452
9QQP|1|m2|G|453
9QQP|1|m2|G|454

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain K3

Small ribosomal subunit protein eS6

Chain Q3

Small ribosomal subunit protein eS24

Chain r2

40S ribosomal protein S4, X isoform (eS4)

Chain u2

Small ribosomal subunit protein eS8