HL_9QQP_094

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

9QQP|1|m2|G|838, 9QQP|1|m2|A|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|C|835
9QQP|1|m2|C|836
9QQP|1|m2|C|837
9QQP|1|m2|G|838
9QQP|1|m2|A|839
9QQP|1|m2|G|840
9QQP|1|m2|C|841
9QQP|1|m2|C|842
9QQP|1|m2|G|843

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain L3

Small ribosomal subunit protein uS4

Chain Q3

Small ribosomal subunit protein eS24

Chain r2

40S ribosomal protein S4, X isoform (eS4)