HL_9QQQ_009

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9QQQ|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_009 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.2918

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QQQ|1|A|C|419
9QQQ|1|A|U|420
9QQQ|1|A|U|421
9QQQ|1|A|C|422
9QQQ|1|A|G|423
9QQQ|1|A|G|424

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain D

Small ribosomal subunit protein uS4