HL_9QQQ_021

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9QQQ|1|A|C|1136, 9QQQ|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_021 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3602

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|A|G|1134
9QQQ|1|A|U|1135
9QQQ|1|A|C|1136
9QQQ|1|A|C|1137
9QQQ|1|A|G|1138
9QQQ|1|A|G|1139
9QQQ|1|A|C|1140

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9