HL_9QQQ_022

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9QQQ|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_022 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.339

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9QQQ|1|A|U|1165
9QQQ|1|A|G|1166
9QQQ|1|A|A|1167
9QQQ|1|A|U|1168
9QQQ|1|A|A|1169
9QQQ|1|A|A|1170
9QQQ|1|A|A|1171

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain U

Small ribosomal subunit protein bS21

Chain V

Small ribosomal subunit protein bS1