HL_9QQQ_025
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 9QQQ|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQQ_025 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.1926
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QQQ|1|A|G|1356
9QQQ|1|A|A|1357
9QQQ|1|A|U|1358
9QQQ|1|A|C|1359
9QQQ|1|A|A|1360
9QQQ|1|A|G|1361
9QQQ|1|A|A|1362
9QQQ|1|A|A|1363
9QQQ|1|A|U|1364
9QQQ|1|A|G|1365
9QQQ|1|A|C|1366
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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