HL_9QQQ_056
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- (PSU)GCUAACG
- Length
- 8 nucleotides
- Bulged bases
- 9QQQ|1|a|U|958, 9QQQ|1|a|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQQ_056 not in the Motif Atlas
- Homologous match to HL_7A0S_026
- Geometric discrepancy: 0.1723
- The information below is about HL_7A0S_026
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 428
Unit IDs
9QQQ|1|a|PSU|955
9QQQ|1|a|G|956
9QQQ|1|a|C|957
9QQQ|1|a|U|958
9QQQ|1|a|A|959
9QQQ|1|a|A|960
9QQQ|1|a|C|961
9QQQ|1|a|G|962
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: