HL_9QQQ_079

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9QQQ|1|a|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_079 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1174

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9QQQ|1|a|C|2248
9QQQ|1|a|U|2249
9QQQ|1|a|G|2250
9QQQ|1|a|OMG|2251
9QQQ|1|a|G|2252
9QQQ|1|a|G|2253
9QQQ|1|a|C|2254
9QQQ|1|a|G|2255
9QQQ|1|a|G|2256

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27