HL_9QQQ_095

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_095 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.0881

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QQQ|1|a|A|2856
9QQQ|1|a|G|2857
9QQQ|1|a|C|2858
9QQQ|1|a|G|2859
9QQQ|1|a|A|2860
9QQQ|1|a|U|2861

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL19