HL_9QQQ_098

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

9QQQ|1|b|U|87, 9QQQ|1|b|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_098 not in the Motif Atlas

Geometric match to HL_8B0X_098

Geometric discrepancy: 0.1133

The information below is about HL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9QQQ|1|b|G|86
9QQQ|1|b|U|87
9QQQ|1|b|C|88
9QQQ|1|b|U|89
9QQQ|1|b|C|90

Current chains

Chain b

E. coli 5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

Large ribosomal subunit protein uL16