HL_9QSJ_006

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1382

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9QSJ|1|A|A|320
9QSJ|1|A|A|321
9QSJ|1|A|C|322
9QSJ|1|A|U|323
9QSJ|1|A|G|324
9QSJ|1|A|A|325
9QSJ|1|A|G|326
9QSJ|1|A|A|327
9QSJ|1|A|C|328
9QSJ|1|A|A|329
9QSJ|1|A|C|330
9QSJ|1|A|G|331
9QSJ|1|A|G|332
9QSJ|1|A|U|333

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20