HL_9QSJ_021

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9QSJ|1|A|C|1136, 9QSJ|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_021 not in the Motif Atlas

Geometric match to HL_8B0X_023

Geometric discrepancy: 0.1038

The information below is about HL_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9QSJ|1|A|G|1134
9QSJ|1|A|U|1135
9QSJ|1|A|C|1136
9QSJ|1|A|C|1137
9QSJ|1|A|G|1138
9QSJ|1|A|G|1139
9QSJ|1|A|C|1140

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9