HL_9QSJ_037

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9QSJ|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_037 not in the Motif Atlas

Geometric match to HL_7KKV_002

Geometric discrepancy: 0.0757

The information below is about HL_7KKV_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9QSJ|1|a|U|137
9QSJ|1|a|U|138
9QSJ|1|a|U|139
9QSJ|1|a|C|140
9QSJ|1|a|G|141
9QSJ|1|a|A|142

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23