HL_9QSJ_048

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9QSJ|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QSJ_048 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.215

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QSJ|1|a|C|487
9QSJ|1|a|G|488
9QSJ|1|a|G|489
9QSJ|1|a|C|490
9QSJ|1|a|G|491
9QSJ|1|a|A|492
9QSJ|1|a|G|493

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22