HL_9QSJ_054
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GGUAACAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QSJ_054 not in the Motif Atlas
- Geometric match to HL_8B0X_052
- Geometric discrepancy: 0.0559
- The information below is about HL_8B0X_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9QSJ|1|a|G|712
9QSJ|1|a|G|713
9QSJ|1|a|U|714
9QSJ|1|a|A|715
9QSJ|1|a|A|716
9QSJ|1|a|C|717
9QSJ|1|a|A|718
9QSJ|1|a|C|719
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- Small ribosomal subunit protein uS15
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: